Modern plant science increasingly relies on large, heterogeneous datasets, but challenges in experimental design, data preprocessing, and reproducibility hinder research throughput. Here we introduce Aleks, an AI-powered multi-agent system that integrates domain knowledge, data analysis, and machine learning within a structured framework to autonomously conduct data-driven scientific discovery. Once provided with a research question and dataset, Aleks iteratively formulated problems, explored alternative modeling strategies, and refined solutions across multiple cycles without human intervention. In a case study on grapevine red blotch disease, Aleks progressively identified biologically meaningful features and converged on interpretable models with robust performance. Ablation studies underscored the importance of domain knowledge and memory for coherent outcomes. This exploratory work highlights the promise of agentic AI as an autonomous collaborator for accelerating scientific discovery in plant sciences.

Crop yield prediction is essential for agricultural planning but remains challenging due to the complex interactions between weather, climate, and management practices. To address these challenges, we introduce a deep learning-based multi-model called Climate-Management Aware Vision Transformer (CMAViT), designed for pixel-level vineyard yield predictions. CMAViT integrates both spatial and temporal data by leveraging remote sensing imagery and short-term meteorological data, capturing the effects of growing season variations. Additionally, it incorporates management practices, which are represented in text form, using a cross-attention encoder to model their interaction with time-series data. This innovative multi-modal transformer tested on a large dataset from 2016-2019 covering 2,200 hectares and eight grape cultivars including more than 5 million vines, outperforms traditional models like UNet-ConvLSTM, excelling in spatial variability capture and yield prediction, particularly for extreme values in vineyards. CMAViT achieved an R2 of 0.84 and a MAPE of 8.22% on an unseen test dataset. Masking specific modalities lowered performance: excluding management practices, climate data, and both reduced R2 to 0.73, 0.70, and 0.72, respectively, and raised MAPE to 11.92%, 12.66%, and 12.39%, highlighting each modality's importance for accurate yield prediction. Code is available at https://github.com/plant-ai-biophysics-lab/CMAViT.

Effective monitoring of walnut water status and stress level across the whole orchard is an essential step towards precision irrigation management of walnuts, a significant crop in California. This study presents a machine learning approach using Random Forest (RF) models to map stem water potential (SWP) by integrating high-resolution multispectral remote sensing imagery from Unmanned Aerial Vehicle (UAV) flights with weather data. From 2017 to 2018, five flights of an UAV equipped with a seven-band multispectral camera were conducted over a commercial walnut orchard, paired with concurrent ground measurements of sampled walnut plants. The RF regression model, utilizing vegetation indices derived from orthomosaiced UAV imagery and weather data, effectively estimated ground-measured SWPs, achieving an $R^2$ of 0.63 and a mean absolute error (MAE) of 0.80 bars. The integration of weather data was particularly crucial for consolidating data across various flight dates. Significant variables for SWP estimation included wind speed and vegetation indices such as NDVI, NDRE, and PSRI.A reduced RF model excluding red-edge indices of NDRE and PSRI, demonstrated slightly reduced accuracy ($R^2$ = 0.54). Additionally, the RF classification model predicted water stress levels in walnut trees with 85% accuracy, surpassing the 80% accuracy of the reduced classification model. The results affirm the efficacy of UAV-based multispectral imaging combined with machine learning, incorporating thermal data, NDVI, red-edge indices, and weather data, in walnut water stress estimation and assessment. This methodology offers a scalable, cost-effective tool for data-driven precision irrigation management at an individual plant level in walnut orchards.

Plant diseases are major causes of production losses and may have a significant impact on the agricultural sector. Detecting pests as early as possible can help increase crop yields and production efficiency. Several robotic monitoring systems have been developed allowing to collect data and provide a greater understanding of environmental processes. An agricultural robot can enable accurate timely detection of pests, by traversing the field autonomously and monitoring the entire cropped area within a field. However, in many cases it is impossible to sample all plants due to resource limitations. In this thesis, the development and evaluation of several sampling algorithms are presented to address the challenge of an agriculture-monitoring ground robot designed to locate insects in an agricultural field, where complete sampling of all the plants is infeasible. Two situations were investigated in simulation models that were specially developed as part of this thesis: where no a-priori information on the insects is available and where prior information on the insects distributions within the field is known. For the first situation, seven algorithms were tested, each utilizing an approach to sample the field without prior knowledge of it. For the second situation, we present the development and evaluation of a dynamic sampling algorithm which utilizes real-time information to prioritize sampling at suspected points, locate hot spots and adapt sampling plans accordingly. The algorithm's performance was compared to two existing algorithms using Tetranychidae insect data from previous research. Analyses revealed that the dynamic algorithm outperformed the others.

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When Amazon introduced its home robot Astro earlier this year, it first showcased the robot following behind a person. It's a simple idea that has captured people's imaginations with depictions in science fiction, like R2-D2 and BB-8 from Star Wars, and in reality, with research projects like DARPA's robotic pack mule. Follower robots have been tapped for senseless pursuits like carrying a single bottle of water, but robots can also carry tools in a warehouse or just-picked fruit from an orchard to a packing station. Artificially intelligent machines trained to follow people or other machines can transform how we think about everyday objects, like carry-on luggage or a set of golf clubs. Now the makers of follower robots want to coordinate movement around the modern workplace.